Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs113445284 | chr15:31955729 | C/T | 0.000168 | 402 | 15.7 | 15.25 | 11.8 | KM Plot |
| LGG | rs113451393 | chr9:94151839 | T/C | 1.16E-5 | 406 | 15.15 | 19.2 | 8 | KM Plot |
| LGG | rs1134713 | chr14:100536244 | C/T | 3.52E-6 | 407 | 8 | 11.42 | 15.6 | KM Plot |
| LGG | rs113486799 | chr14:74352645 | T/C | 0 | 406 | 14.92 | 17.03 | 1.23 | KM Plot |
| LGG | rs113492700 | chr17:48546952 | G/A | 2.29E-5 | 399 | 15.17 | 19.35 | 14.12 | KM Plot |
| LGG | rs11354026 | chr2:202091413 | CA/CAA | 5.9E-14 | 403 | 15.2 | 15.7 | 6.63 | KM Plot |
| LGG | rs113622046 | chr8:49702446 | C/T | 6.66E-16 | 405 | 15.67 | 13.75 | 5.17 | KM Plot |
| LGG | rs113634161 | chr14:74351765 | G/C | 1.57E-7 | 404 | 14.67 | 17.12 | 3.93 | KM Plot |
| LGG | rs113645693 | chr7:56012792 | G/A | 1.53E-10 | 405 | 15.3 | 15.93 | 7.8 | KM Plot |
| LGG | rs113736613 | chr7:55957865 | C/G | 1.77E-10 | 406 | 15.2 | 16.08 | 7.8 | KM Plot |
| LGG | rs113770243 | chr2:217173085 | C/T | 4.27E-7 | 400 | 15.67 | 15.13 | 8 | KM Plot |
| LGG | rs113779299 | chr7:56068478 | A/G | 1.6E-10 | 406 | 15.3 | 16.08 | 7.8 | KM Plot |
| LGG | rs11378046 | chr16:67420086 | C/CA | 6.24E-5 | 406 | 15.25 | 16.42 | 16.55 | KM Plot |
| LGG | rs113803860 | chr5:92783870 | A/G | 1.67E-5 | 407 | 15.17 | 16.17 | 18.57 | KM Plot |
| LGG | rs113812368 | chr7:56050369 | C/T | 1.6E-10 | 406 | 15.3 | 16.08 | 7.8 | KM Plot |